```{eval-rst}
.. module:: pilotpy
```

```{eval-rst}
.. automodule:: pilotpy
   :noindex:
```

# API

Import pilotpy as:

```
import pilotpy
```

## tools: `tl`

```{eval-rst}
.. module:: pilotpy.tl
```

```{eval-rst}
.. currentmodule:: pilotpy
```


### Trajectory & Clusters Analysis

```{eval-rst}
.. autosummary::
   :toctree: generated/

   tl.wasserstein_distance
   tl.cell_importance
   tl.genes_importance
   tl.gene_cluster_differentiation
   tl.results_gene_cluster_differentiation
   tl.compute_diff_expressions
  
```
## plot: `pl`

```{eval-rst}
.. module:: pilotpy.pl
```

```{eval-rst}
.. currentmodule:: pilotpy
```
### plots

```{eval-rst}
.. autosummary::
   :toctree: generated/

   pl.heatmaps
   pl.trajectory
   pl.fit_pricipla_graph
   pl.go_enrichment
   pl.exploring_specific_genes
   pl.genes_selection_heatmap
   pl.plot_hallmark_genes_clusters
   pl.plot_gene_list_pattern
  
```