pilotpy.pl.exploring_specific_genes
- pilotpy.pl.exploring_specific_genes(cluster_name='cell_type', font_size=24, gene_list=[], fig_size=(64, 56), p_value=0.01, create_new_plot_folder=True, fc_ther=0.5)
Explore specific genes within a cluster to analyze their patterns in comparison to other cell types.
- Parameters:
- cluster_namestr
The name of the cluster you’re interested in exploring.
- sortlist
List of column names for sorting the results.
- number_genesint
Number of top genes to display for each pattern (linear, quadratic, etc.).
- cluster_nameslist
List of cluster names for exploration (if empty, all clusters will be considered).
- font_sizeint
Font size for text and labels in plots.
- gene_listlist
List of specific genes to explore within the cluster.
- fig_size: tuple,optional
Size of the plot.
- fc_ther: float, optional
threshold for FC.
- Returns:
Show the genes for the interested cell types