pilotpy.pl.genes_selection_heatmap

pilotpy.pl.genes_selection_heatmap(adata: AnnData, cell_type: str, filter_table_feature: str = 'R-squared', filter_table_feature_pval: str = 'adjusted P-value', table_filter_thr: float = 0.05, table_filter_pval_thr: float = 0.05, cluster_method: str = 'complete', cluster_metric: str = 'correlation', scaler_value: float = 0.4, cmap_color: str = 'RdBu_r', figsize: tuple = (7, 9), fontsize: int = 14, path_to_results: str = 'Results_PILOT/')

Parameters

adataad.AnnData

DESCRIPTION.

cell_typestr

DESCRIPTION.

filter_table_featurestr, optional

DESCRIPTION. The default is ‘R-squared’.

filter_table_feature_pvalstr, optional

DESCRIPTION. The default is ‘adjusted P-value’.

table_filter_thrfloat, optional

DESCRIPTION. The default is 0.05.

table_filter_pval_thrfloat, optional

DESCRIPTION. The default is 0.05.

cluster_methodstr, optional

DESCRIPTION. The default is ‘complete’.

cluster_metricstr, optional

DESCRIPTION. The default is ‘correlation’.

scaler_valuefloat, optional

DESCRIPTION. The default is 0.4.

cmap_colorstr, optional

DESCRIPTION. The default is ‘RdBu_r’.

figsizetuple, optional

DESCRIPTION. The default is (7, 9).

fontsizeint, optional

DESCRIPTION. The default is 14.

path_to_resultsstr, optional

DESCRIPTION. The default is ‘Results_PILOT/’.

Returns

None.